Professor David Fell
Professor of Systems Biology
School of Biological and Medical Sciences
![David Fell](https://media-cdn.brookes.ac.uk/mediacontainer/medialibraries/oxfordbrookes/profile-images/staff/hls/bms/fell-david-p0054633-small.jpg?width=256&height=256&ext=.jpg)
Role
After studying biochemistry at Oxford University, followed by a DPhil on the physical biochemistry of yeast pyruvate kinase, David started lecturing at Oxford Polytechnic. His research gradually moved from experimental biochemistry into computer simulation and theoretical analysis of metabolic control, and he has written the only textbook on metabolic control analysis, Understanding the Control of Metabolism. In 2001, he helped to found and became part-time Chief Scientific Officer of the Oxford company, Physiomics plc, which is using computer simulation of cellular systems for the development and analysis of therapeutic strategies for the pharmaceutical industry.
Physiomics has firmly established itself as a leading light in systems biology approaches to drug discovery and latterly in therapy design, demonstrable through contracts with three major international pharmaceutical companies. Through its strong advocacy of this approach the sector has invested in and adopted new computational biology processes. As Physiomics has continued to grow, it has expanded its own specialist research team, in many cases recruiting scientists trained within Fell’s Brookes-based research group at Brookes.
David is chairman of the Policy Committee of the Biochemical Society, and has been a member of several panels and committees of the Biotechnology and Biological Sciences Research Council.
Research
David’s group formed nearly thirty years ago with initial interests in computer simulation of metabolism and the theory of metabolic control. To these it has since added interests in modelling signal transduction, in various different approaches to network analysis of metabolism, and in reconstructing metabolic networks from genomic data. In the course of this research, he has addressed problems in microbial, plant and mammalian metabolism, often in conjunction with collaborators who have contributed experimental results.
His work forms part of the emerging field of Systems Biology, in that we are concerned with understanding how biological function arises from the interactions between many components, and with building predictive models. Potential applications of our work include the design of changes in cellular metabolism to improve the output of product such as antibiotics, detecting vulnerable sites in cellular networks that could be targets for drugs to control disease-causing organisms, and improved understanding of how organisms manage to adjust their metabolism in response to environmental changes and other signals.
Research group membership
- Cell Systems Modelling Group
Research projects
Research supervisions:
- Computer modelling of metabolic networks
- Designs for metabolic engineering
Further information
Publications
Journal articles
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Norman ROJ, Millat T, Schatsschneider S, Henstra AM, Breitkopf R, Oander B, Annan FJ, Piatek P, Hartman HB, Poolman MG, Fell DA, Winzer K, Minton NP, Hodgman C., A genome-scale model of Clostridium autoethanogenum reveals optimal bioprocess conditions for high-value chemical production from carbon monoxide.
Engineering Biology 3 (2) (2019) pp.32-40 ISSN: 2398-6182 A genome-scale model of Clostridium autoethanogenum reveals optimal bioprocess conditions for high-value chemical production from carbon monoxide. Open Access version on RADAR -
Huma B, Kundu S, Poolman MG; Kruger N, Fell DA, Stoichiometric analysis of the energetics and metabolic impact of photorespiration in C3 plants
The Plant Journal 96 (6) (2018) pp.1228-1241 ISSN: 0960-7412 eISSN: 1365-313X Stoichiometric analysis of the energetics and metabolic impact of photorespiration in C3 plants Open Access version on RADAR -
Ahmad A, Hartman H , Krishnakumar S, Fell D, Poolman M, Srivastava S, A genome scale model of Geobacillus thermoglucosidasius (C56-YS93) reveals its biotechnological potential on rice straw hydrolysate
Journal of Biotechnology 251 (2017) pp.30-37 ISSN: 0168-1656 A genome scale model of Geobacillus thermoglucosidasius (C56-YS93) reveals its biotechnological potential on rice straw hydrolysate Open Access version on RADAR -
Singh D, Carlson R, Fell D, Poolman M, Modelling metabolism of the diatom Phaeodactylum tricornutum
Biochemical Society Transactions 43 (6) (2015) pp.1182-1186 ISSN: 0300-5127 -
Hartman HB, Fell DA, Rossell S, Jensen PR, Woodward MJ, Thorndahl L, Jelsbak L, Olsen JE, Raghunathan A, Daefler S, Poolman MG, Identification of potential drug targets in Salmonella enterica sv. Typhimurium using metabolic modelling and experimental validation
Microbiology 160 (2014) pp.1252-1266 ISSN: 1350-0872 eISSN: 1465-2080 -
Wootton-Beard PC, Brandt K, Fell DA, Warner S, Ryan L, Effects of a beetroot juice with high neobetanin content on the early-phase insulin response in healthy volunteers
Journal of Nutritional Science 3 (2014) ISSN: 2048-6790 eISSN: 2048-6790 -
Poolman MG, Kundu S, Shaw R, Fell DA, Metabolic trade-offs between biomass synthesis and photosynthate export at different light intensities in a genome-scale metabolic model of rice
Frontiers in Plant Science 5 (2014) ISSN: 1664-462X eISSN: 1664-462X -
Kalnenieks U, Pentjuss A, Rutkis R, Stalidzans E, Fell DA, Modeling of Zymomonas mobilis central metabolism for novel metabolic engineering strategies
Frontiers in Microbiology 5 (42) (2014) ISSN: 1664-302X -
Rutkis R, Kalnenieks U, Stalidzans E, Fell DA, Kinetic modelling of the Zymomonas mobilis Entner-Doudoroff pathway: insights into control and functionality
Microbiology 159 (12) (2013) pp.2674-2689 ISSN: 1350-0872 eISSN: 1465-2080 -
Cheung CYM, Williams TCR, Poolman MG, Fell DA, Ratcliffe RG, Sweetlove LJ, A method for accounting for maintenance costs in flux balance analysis improves the prediction of plant cell metabolic phenotypes under stress conditions
The Plant Journal 75 (6) (2013) pp.1050-1061 ISSN: 0960-7412 -
Pentjuss A, Odzina I, Kostromins A, Fell DA, Stalidzans E, Kalnenieks U, Biotechnological potential of respiring Zymomonas mobilis: A stoichiometric analysis of its central metabolism
Journal of Biotechnology 165 (2013) pp.1-10 ISSN: 0168-1656 eISSN: 1873-4863 -
Fell D, Poolman M G, Kundu S, Shaw R, Responses to Light Intensity in a Genome-Scale Model of Rice Metabolism
Plant Physiology 162 (2) (2013) pp.1060-1072 ISSN: 0032-0889 eISSN: 1532-2548 -
Poolman MG, Kundu S, Shaw R, Fell DA, Responses to Light Intensity in a Genome–Scale Model of Rice Metabolism
Plant Physiology 162 (2) (2013) pp.1060-1072 ISSN: 0032-0889 eISSN: 1532-2548 -
Williams TCR, Poolman MG, Howden AJM, Schwarzlander M, Fell DA, Ratcliffe RG, Sweetlove LJ, A genome-scale metabolic model accurately predicts fluxes in central carbon metabolism under stress conditions.
Plant Physiology 154 (1) (2010) pp.311-323 ISSN: 0032-0889 eISSN: 1532-2548 -
Fell D, Poolman M, Gevorgyan A, Building and analysing genome-scale metabolic models
Biochemical Society Transactions 38 (5) (2010) pp.1197-1201 ISSN: 0300-5127 eISSN: 1470-8752 -
Fell DA, Evolution of Central Carbon Metabolism
Molecular Cell 39 (5) (2010) pp.663-664 ISSN: 1097-2765 eISSN: 1097-4164 -
de Figueiredo LF, Schuster S, Kaleta C, Fell DA, Response to comment on 'Can sugars be produced from fatty acids ? A test case for pathway analysis tools'
Bioinformatics 25 (24) (2009) pp.3330-3331 ISSN: 1367-4803 eISSN: 1367-4811 -
Poolman MG, Miguet L, Sweetlove LJ, Fell DA, A Genome-Scale Metabolic Model of Arabidopsis and Some of its Properties.
Plant Physiology 151 (3) (2009) pp.1570-1581 ISSN: 0032-0889 eISSN: 1532-2548 -
de Figueiredo LF, Schuster S, Kaleta C, Fell D, Can sugars be produced from fatty acids? A test case for pathway analysis tools .(Correction to Bioinformatics 24(22))
Bioinformatics 25 (1) (2009) pp.152-158 ISSN: 1367-4803 -
de Figueiredo L, Schuster S, Kaleta C, Fell D, Can sugars be produced from fatty acids? A test case for pathway analysis tools
Bioinformatics 24 (22) (2009) pp.2615-2621 ISSN: 1367-4803 -
Chase JR, Poolman MG, Fell DA, Contribution of NADH Increases to Ethanol's Inhibition of Retinol Oxidation by Human ADH Isoforms
Alcoholism: Clinical and Experimental Research 33 (4) (2009) pp.571-580 ISSN: 0145-6008 eISSN: 1530-0277 -
de Figueiredo LF, Schuster S, Kaleta C, Fell DA, Can Sugars be Produced from Fatty Acids? A Test Case for Pathway Analysis Tools.
Bioinformatics 24 (1) (2008) pp.2615-2621 ISSN: 1367-4803 -
Gevorgyan A, Poolman MG, Fell D, Detection of stoichiometric inconsistencies in biomolecular models
Bioinformatics 24 (19) (2008) pp.2245-2251 ISSN: 1367-4803 -
Schuster S, Pfeiffer T, Fell DA, Is maximization of molar yield in metabolic networks favoured by evolution?
Journal of Theoretical Biology 252 (3) (2008) pp.497-504 ISSN: 0022-5193 -
Poolman MG, Sebu C, Pidcock MK, Fell DA, Modular decomposition of metabolic systems via null-space analysis
Journal of Theoretical Biology 249 (4) (2007) pp.691-705 ISSN: 0022-5193 -
Visser AE, Fell DA, Systems biology meets chromatin function - Workshop on nuclear organization
EMBO Reports 8 (5) (2007) pp.446-450 ISSN: 1469-221X eISSN: 1469-3178 -
Fell D, Poolman M, Sebu C, Pidcock M, Modular decomposition of metabolic systems via null space analysis
Journal of Theoretical Biology 249 (4) (2007) pp.691-705 ISSN: 0022-5193 -
Poolman MG, Bonde BK, Gevorgyan A, Patel HH, Fell DA, Challenges to be faced in the reconstruction of metabolic networks from public databases
Systems Biology 153 (5) (2006) pp.379-384 ISSN: 1741-2471 eISSN: 1741-248X -
Poolman MG, Venkatesh KV, Pidcock MK, Fell DA, A Method for the Determination of Flux in Elementary Modes, and its Application to Lactobacillus rhamnosus
Biotechnology and Bioengineering 88 (2004) pp.601-612 ISSN: 0006-3592 -
Poolman MG, Assmus HE, Fell DA, Applications of Metabolic Modelling to Plant Metabolism
Journal of Experimental Botany 55 (2004) pp.1177-1186 ISSN: 0022-0957 eISSN: 1460-2431 -
Schafer JRA, Fell DA, Rothman D, Shulman RG, Protein Phosphorylation Can Regulate Metabolite Concentrations Rather Than Control Flux: The Example of Glycogen Synthase
Proceedings of the National Academy of Sciences 101 (2004) pp.1485-1490 ISSN: 0027-8424 eISSN: 1091-6490 -
Papin JA, Price ND, Wiback SJ, Fell DA, Palsson BO, Metabolic pathways in the post-genome era
Trends in Biochemical Sciences 28 (5) (2003) pp.250-258 ISSN: 0968-0004 eISSN: 1362-4326 -
Schuster S, Hilgetag C, Woods JH, Fell DA, Reaction routes in biochemical reaction systems: Algebraic properties, validated calculation procedure and example from nucleotide metabolism
Journal of Mathematical Biology 45 (2) (2002) pp.153-181 ISSN: 0303-6812 eISSN: 1432-1416 -
Vogt AM, Nef H, Schaper J, Poolman M, Fell DA, Kubler W, Elsasser A, Metabolic Control Analysis of Anaerobic Glycolysis in Human Hibernating Myocardium Replaces Traditional Concepts of Flux Control
FEBS Letters 517 (2002) pp.245-250 ISSN: 0014-5793 eISSN: 1873-3468 -
Vogt AM, Poolman M, Ackermann C, Yildiz M, Schoels W, Fell DA, Kubler W, Regulation of Glycolytic Flux in Ischemic Preconditioning - a Study Employing Metabolic Control Analysis
Journal of Biological Chemistry 277 (2002) pp.24411-24419 ISSN: 0021-9258 eISSN: 1083-351X -
Chassagnole C, Rais B, Quentin E, Fell DA, Mazat JP, An integrated study of threonine-pathway enzyme kinetics in Escherichia coli
Biochemical Journal 356 (2001) pp.415-423 ISSN: 0264-6021 -
Chassagnole C, Fell DA, Rais B, Kudla B, Mazat JP, Control of the threonine-synthesis pathway in Escherichia coli: A theoretical and experimental approach
Biochemical Journal 356 (2001) pp.433-444 ISSN: 0264-6021 -
Brightman FA, Fell DA, Differential Feedback Regulation of the MAPK Cascade Underlies the Quantitative Differences in EGF and NGF Signalling in PC12 Cells
FEBS Letters 482 (2000) pp.169-174 ISSN: 0014-5793 eISSN: 1873-3468 -
Poolman MG, Fell DA, Thomas S, Modelling Photosynthesis and Its Control
Journal of Experimental Botany 51 (1) (2000) pp.319-328 ISSN: 0022-0957 eISSN: 1460-2431 -
Fell D, Tonic Blues
New Scientist 165 (2000) pp.U1-U1 ISSN: 0262-4079 -
Thomas S, Fell DA, A Control Analysis Exploration of the Role of ATP Utilisation in Glycolytic-flux Control and Glycolytic-metabolite-concentration Regulation
European Journal of Biochemistry 258 (1999) pp.956-967 ISSN: 0014-2956 eISSN: 1432-1033 -
Thomas S, Fell DA, The Role of Multiple Enzyme Activation in Metabolic Flux Control
Advances in Enzyme Regulation 38 (1) (1998) pp.65-85 ISSN: 0065-2571 -
Thomas S, Mooney PJF, Burrell MM, Fell DA, Finite Change Analysis of Glycolytic Intermediates in Tuber Tissue of Lines of Transgenic Potato (solanum Tuberosum) Overexpressing Phosphofructokinase
Biochemical Journal 322 (1997) pp.111-117 ISSN: 0264-6021 eISSN: 1470-8728 -
Thomas S, Mooney PJ, Burrell MM, Fell DA, Metabolic Control Analysis of Glycolysis in Tuber Tissue of Potato (solanum Tuberosum): Explanation for the Low Control Coefficient of Phosphofructokinase Over Respiratory Flux
Biochemical Journal 322 (1) (1997) pp.119-127 ISSN: 0264-6021 eISSN: 1470-8728 -
Thomas S, Fell DA, Design of Metabolic Control for Large Flux Changes
Journal of Theoretical Biology 182 (1996) pp.285-298 ISSN: 0022-5193 -
Thomas S, Fell DA, Error and Bias in Control Coefficients Calculated From Elasticities
Biochemical Society Transactions 23 (1995) pp.S294-S294 ISSN: 0300-5127 eISSN: 1470-8752 -
Thomas S, Moniz-Barrito JP, Fell DA, Woods JH, Poolman MG, Flux Control in Ecosystems
Trends in Ecology & Evolution 10 (1995) pp.245-245 ISSN: 0169-5347 eISSN: 1872-8383 -
Fell DA, Thomas S, Physiological Control of Metabolic Flux - the Requirement for Multisite Modulation
Biochemical Journal 311 (1995) pp.35-39 ISSN: 0264-6021 eISSN: 1470-8728 -
Kashiwaya Y, Sato K, Tsuchiya N, Thomas S, Fell DA, Veech RL, Passoneau JV, Control of Glucose-utilization in Working Perfused Rat-heart
Journal of Biological Chemistry 269 (1994) pp.25502-25514 ISSN: 0021-9258 eISSN: 1083-351X -
Thomas S, Fell DA, Metabolic Control Analysis - Sensitivity of Control Coefficients to Experimentally Determined Variables
Journal of Theoretical Biology 167 (1994) pp.175-200 ISSN: 0022-5193 -
Thomas S, Fell DA, Metacon - a Computer-program for the Algebraic Evaluation of Control Coefficients of Metabolic Networks
Biochemical Journal 292 (1993) pp.473-478 ISSN: 0264-6021 eISSN: 1470-8728
Book chapters
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Fell DA, Thomas S, Exercising Control When Control Is Distributed
in Technological and Medical Implications of Metabolic Control Analysis, Kluwer Academic Publications (2000) ISBN: 978-94-011-4072-0 -
Thomas S, Fell DA, MetaCon-A Computer Programme for the Algebraic Evaluation of Control Coefficients of Metabolic Networks
in Modern Trends in Biothermokinetics, Springer (1993) ISBN: 978-1-4613-6288-3
Conference papers
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Thomas S, Fell DA, Error and Bias in Control Coefficient Values As a Consequence of the Non-linearity of Matrix Method Equations
3 (1995) pp.110-111
Other publications
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Fell DA, Genotype to phenotype mapping still needs under–pinning by research in metabolism and enzymology
,
(2018) Genotype to phenotype mapping still needs under–pinning by research in metabolism and enzymology Open Access version on RADAR -
Fell DA, Thomas S, Increasing the Flux in a Metabolic Pathway: a Metabolic Control Analysis Perspective
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(1998)